Inheritance diagram for umms.core.alignment.SingleEndAlignment.WrapSamRecord:

Collaboration diagram for umms.core.alignment.SingleEndAlignment.WrapSamRecord:

Public Member Functions
	WrapSamRecord (SAMRecord record)

int	getMappingQuality ()

boolean	getDuplicateReadFlag ()

void	setDuplicateReadFlag (boolean duplicateFlag)

String	getReadString ()

Detailed Description

This class is a wrapper for the SAMRecord class so that this class can be correctly serialized

Constructor & Destructor Documentation

umms.core.alignment.SingleEndAlignment.WrapSamRecord.WrapSamRecord ( SAMRecord record )

boolean umms.core.alignment.SingleEndAlignment.WrapSamRecord.getDuplicateReadFlag ( )

int umms.core.alignment.SingleEndAlignment.WrapSamRecord.getMappingQuality ( )

String umms.core.alignment.SingleEndAlignment.WrapSamRecord.getReadString ( )

void umms.core.alignment.SingleEndAlignment.WrapSamRecord.setDuplicateReadFlag ( boolean duplicateFlag )

The documentation for this class was generated from the following file: