umms.core.alignment.PairedEndAlignmentFactory Class Reference

Public Member Functions
AbstractPairedEndAlignment	getAlignment (boolean fragment, SingleEndAlignment firstMate, SingleEndAlignment secondMate, TranscriptionRead strand)

Member Function Documentation

AbstractPairedEndAlignment umms.core.alignment.PairedEndAlignmentFactory.getAlignment	(	boolean	fragment,
		SingleEndAlignment	firstMate,
		SingleEndAlignment	secondMate,
		TranscriptionRead	strand
	)

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The documentation for this class was generated from the following file:

• java/umms/core/alignment/PairedEndAlignmentFactory.java