jaligner.util.SequenceParser Class Reference

Static Public Member Functions
static Sequence	parse (String sequence) throws SequenceParserException
static Sequence	parse (File file) throws SequenceParserException

Detailed Description

SequenceParser to sequences from different formats.
Currently the supported formats are:

• Plain sequence
• Sequence

Author

Ahmed Moustafa (ahmed.nosp@m.@use.nosp@m.rs.sf.nosp@m..net)

Member Function Documentation

static Sequence jaligner.util.SequenceParser.parse ( String  sequence ) throws SequenceParserException

static

Returns a parsed Sequence from a string.

Parameters

sequence

string to parse

Returns

parsed sequence

Exceptions

SequenceParserException

See also

Sequence

static Sequence jaligner.util.SequenceParser.parse ( File  file ) throws SequenceParserException

static

Returns a Sequence parsed and loaded from a file

Parameters

file

to parse

Returns

parsed sequence

Exceptions

SequenceParserException

See also

Sequence

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The documentation for this class was generated from the following file:

• java/jaligner/util/SequenceParser.java