Inheritance diagram for jaligner.formats.FASTA:

Collaboration diagram for jaligner.formats.FASTA:

Public Member Functions
	FASTA ()

String	format (Sequence sequence)

String	format (Alignment alignment)

Public Member Functions inherited from jaligner.formats.Format
abstract String	format (Alignment alignment)

void	setId (String id)

String	getId ()

Detailed Description

FASTA format.

Constructor & Destructor Documentation

jaligner.formats.FASTA.FASTA ( )

Constructor for FASTA.

Here is the call graph for this function:

String jaligner.formats.FASTA.format ( Sequence sequence )

Returns the name, description and sequence combined in one string. The length of each line in the sequence is FASTA.LINE_LENGTH

Here is the call graph for this function:

Here is the caller graph for this function:

String jaligner.formats.FASTA.format ( Alignment alignment )

Parameters

alignment

Here is the call graph for this function:

The documentation for this class was generated from the following file: