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broad.projection.gsa.GeneSetEnrichment Member List

This is the complete list of members for broad.projection.gsa.GeneSetEnrichment, including all inherited members.

GeneSetEnrichment(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, Map< String, Collection< String >> geneSets, boolean normalizeScores, boolean permutePhenotype)broad.projection.gsa.GeneSetEnrichment
GeneSetEnrichment(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, Map< String, Collection< String >> geneSets)broad.projection.gsa.GeneSetEnrichment
GeneSetEnrichment(MatrixWithHeaders patternData, MatrixWithHeaders geneData, Map< String, Collection< String >> geneSets, boolean normalizeScores, boolean permutePhenotype)broad.projection.gsa.GeneSetEnrichment
getKSEnrichments()broad.projection.gsa.GeneSetEnrichment
getKSFDR()broad.projection.gsa.GeneSetEnrichment
getMaxMeanEnrichments()broad.projection.gsa.GeneSetEnrichment
getMaxMeanFDR()broad.projection.gsa.GeneSetEnrichment
getNormalizedKSEnrichments()broad.projection.gsa.GeneSetEnrichment
getNormalizedMaxMeanEnrichments()broad.projection.gsa.GeneSetEnrichment
getRankedList()broad.projection.gsa.GeneSetEnrichment