broad.pda.seq.segmentation.GenomeWithGaps2 Class Reference

Collaboration diagram for broad.pda.seq.segmentation.GenomeWithGaps2:

Public Member Functions
	GenomeWithGaps2 (Collection< Annotation > gaps, String chr, int genomeSize, String orientation)
Gene	getRelativeWindow (int relativeStart, int relativeEnd)
int	getRelativeGenomeLength ()

Constructor & Destructor Documentation

broad.pda.seq.segmentation.GenomeWithGaps2.GenomeWithGaps2	(	Collection< Annotation >	gaps,
		String	chr,
		int	genomeSize,
		String	orientation
	)

Member Function Documentation

int broad.pda.seq.segmentation.GenomeWithGaps2.getRelativeGenomeLength

(

)

Gene broad.pda.seq.segmentation.GenomeWithGaps2.getRelativeWindow	(	int	relativeStart,
		int	relativeEnd
	)

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The documentation for this class was generated from the following file:

• java/broad/pda/seq/segmentation/GenomeWithGaps2.java