Inheritance diagram for broad.pda.seq.segmentation.GeneScore:

Collaboration diagram for broad.pda.seq.segmentation.GeneScore:

Public Member Functions
	GeneScore (Gene gene, double[] scores)

	GeneScore (Gene gene)

void	setEnrichment (double enrichment)

double	getEnrichment ()

void	setNumberOfReads (double numberOfReads)

double	getNumberOfReads ()

void	setAvergeNumberOfReads (double avergeNumberOfReads)

double	getAvergeNumberOfReads ()

void	setRPKM (double rPKM)

double	getRPKM ()

void	setLocalLambda (double localLambda)

double	getLocalLambda ()

void	setGeneLength (double geneLength)

double	getGeneLength ()

void	setNominalPValue (double nominalPValue)

double	getNominalPValue ()

void	setScanPvalue (double scanPvalue)

double	getScanPvalue ()

void	setFullyContainedNumberOfReads (double fullyContainedNumberOfReads)

double	getFullyContainedNumberOfReads ()

Constructor & Destructor Documentation

broad.pda.seq.segmentation.GeneScore.GeneScore	(	Gene	gene,
		double[]	scores
	)

A class to represent the standard scores assigned to a window or Gene in the ContinuousDataAlignmentModel

broad.pda.seq.segmentation.GeneScore.GeneScore ( Gene gene )

Member Function Documentation

double broad.pda.seq.segmentation.GeneScore.getAvergeNumberOfReads ( )

double broad.pda.seq.segmentation.GeneScore.getEnrichment ( )

double broad.pda.seq.segmentation.GeneScore.getFullyContainedNumberOfReads ( )

double broad.pda.seq.segmentation.GeneScore.getGeneLength ( )

double broad.pda.seq.segmentation.GeneScore.getLocalLambda ( )

double broad.pda.seq.segmentation.GeneScore.getNominalPValue ( )

double broad.pda.seq.segmentation.GeneScore.getNumberOfReads ( )

double broad.pda.seq.segmentation.GeneScore.getRPKM ( )

double broad.pda.seq.segmentation.GeneScore.getScanPvalue ( )

void broad.pda.seq.segmentation.GeneScore.setAvergeNumberOfReads ( double avergeNumberOfReads )

void broad.pda.seq.segmentation.GeneScore.setEnrichment ( double enrichment )

void broad.pda.seq.segmentation.GeneScore.setFullyContainedNumberOfReads ( double fullyContainedNumberOfReads )

void broad.pda.seq.segmentation.GeneScore.setGeneLength ( double geneLength )

void broad.pda.seq.segmentation.GeneScore.setLocalLambda ( double localLambda )

void broad.pda.seq.segmentation.GeneScore.setNominalPValue ( double nominalPValue )

void broad.pda.seq.segmentation.GeneScore.setNumberOfReads ( double numberOfReads )

void broad.pda.seq.segmentation.GeneScore.setRPKM ( double rPKM )

void broad.pda.seq.segmentation.GeneScore.setScanPvalue ( double scanPvalue )

The documentation for this class was generated from the following file: