broad.pda.seq.rap.UnmarkDuplicates Class Reference

Inheritance diagram for broad.pda.seq.rap.UnmarkDuplicates:

Collaboration diagram for broad.pda.seq.rap.UnmarkDuplicates:

Static Public Member Functions
static void	main (final String[] args)

Public Attributes
final String	USAGE = "Remove the duplicate flag from all reads in a SAM or BAM file."
File	INPUT
File	OUTPUT

Protected Member Functions
int	doWork ()

Member Function Documentation

int broad.pda.seq.rap.UnmarkDuplicates.doWork ( )

protected

static void broad.pda.seq.rap.UnmarkDuplicates.main ( final String[]  args )

static

Stock main method.

Parameters

args	main arguments

Member Data Documentation

File broad.pda.seq.rap.UnmarkDuplicates.INPUT

File broad.pda.seq.rap.UnmarkDuplicates.OUTPUT

final String broad.pda.seq.rap.UnmarkDuplicates.USAGE = "Remove the duplicate flag from all reads in a SAM or BAM file."

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The documentation for this class was generated from the following file:

• java/broad/pda/seq/rap/UnmarkDuplicates.java