broad.pda.seq.rap.SkellamKLPeakCaller Member List

This is the complete list of members for broad.pda.seq.rap.SkellamKLPeakCaller, including all inherited members.

ANNOTATION	broad.pda.seq.rap.GenomeCommandLineProgram
BACKGROUND	broad.pda.seq.rap.SkellamKLPeakCaller
COORD_SPACE	broad.pda.seq.rap.GenomeCommandLineProgram
coordinateSpace	broad.pda.seq.rap.GenomeCommandLineProgram	protected
customCommandLineValidation()	broad.pda.seq.rap.GenomeCommandLineProgram	protected
CUTOFF	broad.pda.seq.rap.SkellamKLPeakCaller
DEPLETED	broad.pda.seq.rap.SkellamKLPeakCaller
doWork()	broad.pda.seq.rap.SkellamKLPeakCaller	protected
GENE	broad.pda.seq.rap.GenomeCommandLineProgram
getCoordinateSpace()	broad.pda.seq.rap.GenomeCommandLineProgram	protected
getGenes()	broad.pda.seq.rap.GenomeCommandLineProgram
getRegions()	broad.pda.seq.rap.GenomeCommandLineProgram
getRegionSet()	broad.pda.seq.rap.GenomeCommandLineProgram
getRegionsMap()	broad.pda.seq.rap.GenomeCommandLineProgram
isGenomicSpace()	broad.pda.seq.rap.GenomeCommandLineProgram
loadAlignmentModel(File bamFile)	broad.pda.seq.rap.GenomeCommandLineProgram
loadAlignmentModel(File bamFile, boolean pairedEnd)	broad.pda.seq.rap.GenomeCommandLineProgram
loadCoordinateSpace()	broad.pda.seq.rap.GenomeCommandLineProgram	protected
main(final String[] args)	broad.pda.seq.rap.SkellamKLPeakCaller	static
MASK_FILE	broad.pda.seq.rap.GenomeCommandLineProgram
MAX_FRAGMENT_LENGTH	broad.pda.seq.rap.GenomeCommandLineProgram
MIN_MAPPING_QUALITY	broad.pda.seq.rap.GenomeCommandLineProgram
OUTPUT	broad.pda.seq.rap.SkellamKLPeakCaller
OVERLAP	broad.pda.seq.rap.SkellamKLPeakCaller
PCT_MASKED_ALLOWED	broad.pda.seq.rap.GenomeCommandLineProgram
REGION	broad.pda.seq.rap.GenomeCommandLineProgram
SIZES	broad.pda.seq.rap.GenomeCommandLineProgram
TARGET	broad.pda.seq.rap.SkellamKLPeakCaller
USAGE	broad.pda.seq.rap.SkellamKLPeakCaller
WINDOW	broad.pda.seq.rap.SkellamKLPeakCaller