broad.pda.seq.rap.RAPPeakCaller Member List

This is the complete list of members for broad.pda.seq.rap.RAPPeakCaller, including all inherited members.

callKLPeaks(String outFile, double klCutOff)	broad.pda.seq.rap.RAPPeakCaller
callSkellamPeaks(String outFile, double maxSkellam, double maxScanPvalue)	broad.pda.seq.rap.RAPPeakCaller
getCoordinateSpace()	broad.pda.seq.rap.RAPPeakCaller
logger	broad.pda.seq.rap.RAPPeakCaller	protectedstatic
main(String[] args)	broad.pda.seq.rap.RAPPeakCaller	static
RAPPeakCaller(String backgroundFile, String rapFile, String sizes, String maskedregions, int windowSize, int step)	broad.pda.seq.rap.RAPPeakCaller