broad.pda.seq.rap.DistanceToBED Class Reference

Inheritance diagram for broad.pda.seq.rap.DistanceToBED:

Collaboration diagram for broad.pda.seq.rap.DistanceToBED:

Static Public Member Functions
static void	main (final String[] args)

Public Attributes
File	QUERY
File	REF
File	EXCLUDE_BED = null
Boolean	IGNORE_STRAND = false
Boolean	MATCH_OPPOSITE_STRAND = false
Boolean	POINT_MATH = false
File	OUTPUT

Protected Member Functions
int	doWork ()

Member Function Documentation

int broad.pda.seq.rap.DistanceToBED.doWork ( )

protected

static void broad.pda.seq.rap.DistanceToBED.main ( final String[]  args )

static

Stock main method.

Parameters

args	main arguments

Member Data Documentation

File broad.pda.seq.rap.DistanceToBED.EXCLUDE_BED = null

Boolean broad.pda.seq.rap.DistanceToBED.IGNORE_STRAND = false

Boolean broad.pda.seq.rap.DistanceToBED.MATCH_OPPOSITE_STRAND = false

File broad.pda.seq.rap.DistanceToBED.OUTPUT

Boolean broad.pda.seq.rap.DistanceToBED.POINT_MATH = false

File broad.pda.seq.rap.DistanceToBED.QUERY

File broad.pda.seq.rap.DistanceToBED.REF

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The documentation for this class was generated from the following file:

• java/broad/pda/seq/rap/DistanceToBED.java