Public Member Functions
	ReadSimulator2 (Gene gene, int numProteins, int coverage, double enrichment, double secondReadBias, String genomeDir, String save) throws Exception

Static Public Member Functions
static net.sf.samtools.SAMRecord	mapSamRecord (net.sf.samtools.SAMRecord sam, Gene gene, SAMFileHeader header)

static void	main (String[] args) throws Exception

Constructor & Destructor Documentation

broad.pda.seq.protection.ReadSimulator2.ReadSimulator2	(	Gene	gene,
		int	numProteins,
		int	coverage,
		double	enrichment,
		double	secondReadBias,
		String	genomeDir,
		String	save
	)		throws Exception

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Member Function Documentation

static void broad.pda.seq.protection.ReadSimulator2.main ( String[] args ) throws Exception

static

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static net.sf.samtools.SAMRecord broad.pda.seq.protection.ReadSimulator2.mapSamRecord	(	net.sf.samtools.SAMRecord	sam,
		Gene	gene,
		SAMFileHeader	header
	)

static

The documentation for this class was generated from the following file: