broad.pda.seq.fastq.SplitFastqByIndex Class Reference

Public Member Functions
	SplitFastqByIndex (String fastq, String indexInfoFname, String index, String saveDir, boolean allowMismatch) throws IOException

Static Public Member Functions
static String	extractBarcodeFromFastq (FastqRecord record)
static void	writeBarcodeCount (String save, Map< String, Integer > barcodeCount, boolean sortedByCount) throws IOException
static void	main (String[] args) throws IOException

Constructor & Destructor Documentation

broad.pda.seq.fastq.SplitFastqByIndex.SplitFastqByIndex	(	String	fastq,
		String	indexInfoFname,
		String	index,
		String	saveDir,
		boolean	allowMismatch
	)		throws IOException

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Member Function Documentation

static String broad.pda.seq.fastq.SplitFastqByIndex.extractBarcodeFromFastq ( FastqRecord  record )

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static void broad.pda.seq.fastq.SplitFastqByIndex.main ( String[]  args ) throws IOException

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static void broad.pda.seq.fastq.SplitFastqByIndex.writeBarcodeCount ( String  save, Map< String, Integer >  barcodeCount, boolean  sortedByCount  ) throws IOException

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The documentation for this class was generated from the following file:

• java/broad/pda/seq/fastq/SplitFastqByIndex.java