broad.pda.seq.fastq.FastqSplitterByBarcode Member List

This is the complete list of members for broad.pda.seq.fastq.FastqSplitterByBarcode, including all inherited members.

FastqSplitterByBarcode(String bcFile)	broad.pda.seq.fastq.FastqSplitterByBarcode
getPair1Parser()	broad.pda.seq.fastq.FastqSplitterByBarcode	protected
getPair2Parser()	broad.pda.seq.fastq.FastqSplitterByBarcode	protected
getRead1Trim3p()	broad.pda.seq.fastq.FastqSplitterByBarcode
getRead1Trim5p()	broad.pda.seq.fastq.FastqSplitterByBarcode
getRead2Trim3p()	broad.pda.seq.fastq.FastqSplitterByBarcode
getRead2Trim5p()	broad.pda.seq.fastq.FastqSplitterByBarcode
hasMore()	broad.pda.seq.fastq.FastqSplitterByBarcode
isAddToReadName()	broad.pda.seq.fastq.FastqSplitterByBarcode
isAtEnd()	broad.pda.seq.fastq.FastqSplitterByBarcode
isPaired()	broad.pda.seq.fastq.FastqSplitterByBarcode
main(String[] args)	broad.pda.seq.fastq.FastqSplitterByBarcode	static
setAddToReadName(boolean addToReadName)	broad.pda.seq.fastq.FastqSplitterByBarcode
setAtEnd(boolean atEnd)	broad.pda.seq.fastq.FastqSplitterByBarcode
setPair1Parser(FastqParser pair1Parser)	broad.pda.seq.fastq.FastqSplitterByBarcode	protected
setPair2Parser(FastqParser pair2Parser)	broad.pda.seq.fastq.FastqSplitterByBarcode	protected
setPaired(boolean paired)	broad.pda.seq.fastq.FastqSplitterByBarcode
setRead1Trim3p(int read1Trim3p)	broad.pda.seq.fastq.FastqSplitterByBarcode
setRead1Trim5p(int read1Trim5p)	broad.pda.seq.fastq.FastqSplitterByBarcode
setRead2Trim3p(int read2Trim3p)	broad.pda.seq.fastq.FastqSplitterByBarcode
setRead2Trim5p(int read2Trim5p)	broad.pda.seq.fastq.FastqSplitterByBarcode
start(String pair1Source, String outputDir, String pair2Source)	broad.pda.seq.fastq.FastqSplitterByBarcode
stop()	broad.pda.seq.fastq.FastqSplitterByBarcode
updateReadInfoWithBarcode(FastqSequence read, String bc)	broad.pda.seq.fastq.FastqSplitterByBarcode	protected