broad.pda.seq.fastq.FastqSequence Member List

This is the complete list of members for broad.pda.seq.fastq.FastqSequence, including all inherited members.

FastqSequence(String name, String sequence, String description, String quality)	broad.pda.seq.fastq.FastqSequence
getDescription()	broad.pda.seq.fastq.FastqSequence
getFirstNBPs(int n)	broad.pda.seq.fastq.FastqSequence
getLength()	broad.pda.seq.fastq.FastqSequence
getName()	broad.pda.seq.fastq.FastqSequence
getSequence()	broad.pda.seq.fastq.FastqSequence
isPartialPolyA(int polyN)	broad.pda.seq.fastq.FastqSequence
isPolyA()	broad.pda.seq.fastq.FastqSequence
removeAtSymbolFromName()	broad.pda.seq.fastq.FastqSequence
setDescription(String descr)	broad.pda.seq.fastq.FastqSequence
setName(String name)	broad.pda.seq.fastq.FastqSequence
toFasta()	broad.pda.seq.fastq.FastqSequence
toFasta(int readNum)	broad.pda.seq.fastq.FastqSequence
toFastq()	broad.pda.seq.fastq.FastqSequence
toString()	broad.pda.seq.fastq.FastqSequence
trimBeginning(char letter)	broad.pda.seq.fastq.FastqSequence
trimEndBases(int numOfBasesToTrim)	broad.pda.seq.fastq.FastqSequence
trimEnds(char letter)	broad.pda.seq.fastq.FastqSequence
trimFirstNBPs(int n)	broad.pda.seq.fastq.FastqSequence
trimLinker(String linkerSeq)	broad.pda.seq.fastq.FastqSequence
trimPolyA()	broad.pda.seq.fastq.FastqSequence
trimStartBases(int numOfBasesToTrim)	broad.pda.seq.fastq.FastqSequence
write(BufferedWriter bw)	broad.pda.seq.fastq.FastqSequence