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broad.pda.seq.clip.FastaExtendPeaks Member List

This is the complete list of members for broad.pda.seq.clip.FastaExtendPeaks, including all inherited members.

FastaExtendPeaks(String genomeFasta, String bedFile, String peakFile, int windowSize)broad.pda.seq.clip.FastaExtendPeaks
FastaExtendPeaks(Map< String, Sequence > chrsByName, String bedFile, String peakFile, int windowSize)broad.pda.seq.clip.FastaExtendPeaks
FastaExtendPeaks(Map< String, Sequence > chrsByName, String bedFile)broad.pda.seq.clip.FastaExtendPeaks
FastaExtendPeaks(Map< String, Sequence > chrsByName, String bedFile, String peakFile)broad.pda.seq.clip.FastaExtendPeaks
FastaExtendPeaks(String genomeFasta, String bedFile)broad.pda.seq.clip.FastaExtendPeaks
main(String[] args)broad.pda.seq.clip.FastaExtendPeaksstatic
writeFasta(Map< String, Collection< Gene >> genesToWrite, String outFile)broad.pda.seq.clip.FastaExtendPeaks
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