broad.pda.seq.alignment.StoredAlignmentStats Member List

This is the complete list of members for broad.pda.seq.alignment.StoredAlignmentStats, including all inherited members.

getAlignmentIdxSizeAtCreation()	broad.pda.seq.alignment.StoredAlignmentStats
getAlignmentSizeAtCreation()	broad.pda.seq.alignment.StoredAlignmentStats
getGlobalRPKMConstant()	broad.pda.seq.alignment.StoredAlignmentStats
getLambda()	broad.pda.seq.alignment.StoredAlignmentStats
getLastModifiedAlignmentIdxTimeStampAtCreation()	broad.pda.seq.alignment.StoredAlignmentStats
getLastModifiedAlignmentTimeStampAtCreation()	broad.pda.seq.alignment.StoredAlignmentStats
getLastModifiedStoredTimeStamp()	broad.pda.seq.alignment.StoredAlignmentStats
getLocalRpkmConstant()	broad.pda.seq.alignment.StoredAlignmentStats
getMaskedRegions()	broad.pda.seq.alignment.StoredAlignmentStats
getNumberOfReads()	broad.pda.seq.alignment.StoredAlignmentStats
getNumMarkers()	broad.pda.seq.alignment.StoredAlignmentStats
getReasonForUnsafe()	broad.pda.seq.alignment.StoredAlignmentStats	protected
isAlignmentPaired()	broad.pda.seq.alignment.StoredAlignmentStats
isSafeToLoad()	broad.pda.seq.alignment.StoredAlignmentStats	protected
load(File alignmentStoredStatFile)	broad.pda.seq.alignment.StoredAlignmentStats
SAVED_MODEL_STATS_EXT	broad.pda.seq.alignment.StoredAlignmentStats	static
setAsSafeToLoad()	broad.pda.seq.alignment.StoredAlignmentStats	protected
setAsUnsafeToLoad()	broad.pda.seq.alignment.StoredAlignmentStats	protected
setReasonForUnsafe(String reasonForUnsafe)	broad.pda.seq.alignment.StoredAlignmentStats	protected
store(AlignmentDataModelStats alignmentStats)	broad.pda.seq.alignment.StoredAlignmentStats	static
StoredAlignmentStats()	broad.pda.seq.alignment.StoredAlignmentStats