broad.pda.samtools.SAMPairedEndFileReader Member List

This is the complete list of members for broad.pda.samtools.SAMPairedEndFileReader, including all inherited members.

close()	broad.pda.samtools.SAMPairedEndFileReader
convertToPairedEndFragment(SAMRecord rec)	broad.pda.samtools.SAMPairedEndFileReader	static
getHeader()	broad.pda.samtools.SAMPairedEndFileReader
getReader()	broad.pda.samtools.SAMPairedEndFileReader
getSAMRecordIterator()	broad.pda.samtools.SAMPairedEndFileReader
getSequenceNames()	broad.pda.samtools.SAMPairedEndFileReader
hasIndex()	broad.pda.samtools.SAMPairedEndFileReader
iterator()	broad.pda.samtools.SAMPairedEndFileReader
MAX_INSERT	broad.pda.samtools.SAMPairedEndFileReader	static
query(String sequence, int start, int end, boolean contained)	broad.pda.samtools.SAMPairedEndFileReader
SAMPairedEndFileReader(final File file)	broad.pda.samtools.SAMPairedEndFileReader