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broad.pda.samtools.PairedEndTDF Member List

This is the complete list of members for broad.pda.samtools.PairedEndTDF, including all inherited members.

customCommandLineValidation()broad.pda.samtools.PairedEndTDFprotected
doWork()broad.pda.samtools.PairedEndTDFprotected
extendPairedEndReads(final File inSamOrBam, final File outSamOrBam)broad.pda.samtools.PairedEndTDF
GENOMEbroad.pda.samtools.PairedEndTDF
INCLUDE_DUPLICATESbroad.pda.samtools.PairedEndTDF
INPUTbroad.pda.samtools.PairedEndTDF
KEEP_INTERMEDIATEbroad.pda.samtools.PairedEndTDF
main(final String[] args)broad.pda.samtools.PairedEndTDFstatic
MAX_INSERTbroad.pda.samtools.PairedEndTDF
OUTPUTbroad.pda.samtools.PairedEndTDF
USAGEbroad.pda.samtools.PairedEndTDF
WINDOWbroad.pda.samtools.PairedEndTDF
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