broad.pda.samtools.FilterFastqReads Class Reference

Inheritance diagram for broad.pda.samtools.FilterFastqReads:

Collaboration diagram for broad.pda.samtools.FilterFastqReads:

Public Member Functions
String	getReadName (final String fastaqHeader)

Static Public Member Functions
static void	main (final String[] args)

Public Attributes
String	USAGE = "Filters FASTQ files to remove reads matching the provided read name list."
File	INPUT_1
File	INPUT_2 = null
File	OUTPUT_1
File	OUTPUT_2 = null
File	READ_LIST_FILE

Protected Member Functions
int	doWork ()

Member Function Documentation

int broad.pda.samtools.FilterFastqReads.doWork ( )

protected

Here is the call graph for this function:

String broad.pda.samtools.FilterFastqReads.getReadName

(

final String

fastaqHeader

)

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static void broad.pda.samtools.FilterFastqReads.main ( final String[]  args )

static

Stock main method.

Parameters

args	main arguments

Member Data Documentation

File broad.pda.samtools.FilterFastqReads.INPUT_1

File broad.pda.samtools.FilterFastqReads.INPUT_2 = null

File broad.pda.samtools.FilterFastqReads.OUTPUT_1

File broad.pda.samtools.FilterFastqReads.OUTPUT_2 = null

File broad.pda.samtools.FilterFastqReads.READ_LIST_FILE

String broad.pda.samtools.FilterFastqReads.USAGE = "Filters FASTQ files to remove reads matching the provided read name list."

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The documentation for this class was generated from the following file:

• java/broad/pda/samtools/FilterFastqReads.java