broad.pda.rap.misc.FindEnrichedDepletedRegions Class Reference

Collaboration diagram for broad.pda.rap.misc.FindEnrichedDepletedRegions:

Public Member Functions
	FindEnrichedDepletedRegions (ScanStatisticDataAlignmentModel model, int windowLength, String chr, String save) throws IOException

Static Public Member Functions
static void	main (String[] args) throws IOException

Constructor & Destructor Documentation

broad.pda.rap.misc.FindEnrichedDepletedRegions.FindEnrichedDepletedRegions	(	ScanStatisticDataAlignmentModel	model,
		int	windowLength,
		String	chr,
		String	save
	)		throws IOException

Try and find large regions of enrichment and depletion that are unexpected given a randomized model on a given chromosome

Parameters

model

Data alignment model representing the underling read data

Exceptions

IOException

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Member Function Documentation

static void broad.pda.rap.misc.FindEnrichedDepletedRegions.main ( String[]  args ) throws IOException

static

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The documentation for this class was generated from the following file:

• java/broad/pda/rap/misc/FindEnrichedDepletedRegions.java