broad.pda.geneexpression.clustering.Kmeans Member List

This is the complete list of members for broad.pda.geneexpression.clustering.Kmeans, including all inherited members.

calcLightSilhouette()	broad.pda.geneexpression.clustering.Kmeans
calcSilhouette()	broad.pda.geneexpression.clustering.Kmeans
distance(double[] a, double[] b, String metric)	broad.pda.geneexpression.clustering.Kmeans	static
getClusterInfo()	broad.pda.geneexpression.clustering.Kmeans
getSilhouette()	broad.pda.geneexpression.clustering.Kmeans
Kmeans(MatrixWithHeaders mat, MatrixWithHeaders initCentroids, int numOfClusters, String distanceMetric)	broad.pda.geneexpression.clustering.Kmeans
runKmeans()	broad.pda.geneexpression.clustering.Kmeans
writeClusters(BufferedWriter bw)	broad.pda.geneexpression.clustering.Kmeans
writeClustersCentroids(BufferedWriter bw)	broad.pda.geneexpression.clustering.Kmeans
writeDistanceFromCentroids(BufferedWriter bw)	broad.pda.geneexpression.clustering.Kmeans
writeDistanceFromInputCentroids(BufferedWriter bw)	broad.pda.geneexpression.clustering.Kmeans
writeDistanceFromInputCentroids(MatrixWithHeaders centroids, BufferedWriter bw)	broad.pda.geneexpression.clustering.Kmeans
writeSilhouetteRes(int currK, BufferedWriter bwGeneS, BufferedWriter bwAllS, BufferedWriter bwClusterS)	broad.pda.geneexpression.clustering.Kmeans