broad.pda.geneexpression.agilent.AgilentUtils Member List

This is the complete list of members for broad.pda.geneexpression.agilent.AgilentUtils, including all inherited members.

makeDataMatrix(File agilentFile, Collection< String > nonFlaggedGenes)	broad.pda.geneexpression.agilent.AgilentUtils	static
makeDataMatrix(File[] agilentFiles)	broad.pda.geneexpression.agilent.AgilentUtils	static
makeDataMatrix(File[] agilentFiles, Map< String, ExpressionExperimentInfo > experimentInfo)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseAgilentExperiment(File file)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseAgilentExperimentGlobalStats(File file)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseControlSamples(String experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoFile(File experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoFileToGroup(File experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoFileToGroups(File experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoFileToName(File experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoFileToName(File experimentInfoFile, boolean passingFilter)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoGroups(String experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static
parseExperimentInfoNonControls(String experimentInfoFile)	broad.pda.geneexpression.agilent.AgilentUtils	static