broad.pda.geneexpression.agilent.AgilentProbe Class Reference

Public Member Functions
	AgilentProbe (String line, String headerLine)
String	getGeneName ()
String	getProbename ()
double	getProcessedSignal ()
int	getColumnNum ()
String	getGeneDescription ()
int	getRownum ()
boolean	isControlProbe ()
boolean	isProbeFound ()
boolean	isProbeNonUniform ()
boolean	isProbePopulationOutlier ()
boolean	isProbeWellAboveBackground ()
boolean	isSaturated ()
double	getNormalizedSignal (double normFactor, double spikeInLowerLimit, double saturationLevel)
double	getNormalizedSignal (double spikeInLowerLimit, double saturationLevel)
boolean	isFlagged (double spikeInLowerLimit)
double	getLogProcessedSignal ()

Constructor & Destructor Documentation

broad.pda.geneexpression.agilent.AgilentProbe.AgilentProbe	(	String	line,
		String	headerLine
	)

Member Function Documentation

int broad.pda.geneexpression.agilent.AgilentProbe.getColumnNum

(

)

String broad.pda.geneexpression.agilent.AgilentProbe.getGeneDescription

(

)

String broad.pda.geneexpression.agilent.AgilentProbe.getGeneName

(

)

double broad.pda.geneexpression.agilent.AgilentProbe.getLogProcessedSignal

(

)

double broad.pda.geneexpression.agilent.AgilentProbe.getNormalizedSignal	(	double	normFactor,
		double	spikeInLowerLimit,
		double	saturationLevel
	)

double broad.pda.geneexpression.agilent.AgilentProbe.getNormalizedSignal	(	double	spikeInLowerLimit,
		double	saturationLevel
	)

String broad.pda.geneexpression.agilent.AgilentProbe.getProbename

(

)

double broad.pda.geneexpression.agilent.AgilentProbe.getProcessedSignal

(

)

int broad.pda.geneexpression.agilent.AgilentProbe.getRownum

(

)

boolean broad.pda.geneexpression.agilent.AgilentProbe.isControlProbe

(

)

boolean broad.pda.geneexpression.agilent.AgilentProbe.isFlagged

(

double

spikeInLowerLimit

)

Here is the call graph for this function:

boolean broad.pda.geneexpression.agilent.AgilentProbe.isProbeFound

(

)

boolean broad.pda.geneexpression.agilent.AgilentProbe.isProbeNonUniform

(

)

Here is the caller graph for this function:

boolean broad.pda.geneexpression.agilent.AgilentProbe.isProbePopulationOutlier

(

)

boolean broad.pda.geneexpression.agilent.AgilentProbe.isProbeWellAboveBackground

(

)

Here is the caller graph for this function:

boolean broad.pda.geneexpression.agilent.AgilentProbe.isSaturated

(

)

---

The documentation for this class was generated from the following file:

• java/broad/pda/geneexpression/agilent/AgilentProbe.java