Collaboration diagram for broad.pda.geneexpression.PaGEJava:

Public Member Functions
	PaGEJava (MatrixWithHeaders expression, Map< String, ArrayList > groupIndexes, String controlGroup)

	PaGEJava (File gctFile, File clsFile) throws Exception

Map< String, Collection< String > >	getSignificantGeneSets (double alpha, double minFold)

void	write (String save, File chipfile, double alpha, double fold) throws IOException

Static Public Member Functions
static void	main (String[] args) throws Exception

Constructor & Destructor Documentation

broad.pda.geneexpression.PaGEJava.PaGEJava	(	MatrixWithHeaders	expression,
		Map< String, ArrayList >	groupIndexes,
		String	controlGroup
	)

Here is the caller graph for this function:

broad.pda.geneexpression.PaGEJava.PaGEJava	(	File	gctFile,
		File	clsFile
	)		throws Exception

Member Function Documentation

Map<String, Collection<String> > broad.pda.geneexpression.PaGEJava.getSignificantGeneSets	(	double	alpha,
		double	minFold
	)

Here is the call graph for this function:

static void broad.pda.geneexpression.PaGEJava.main ( String[] args ) throws Exception

static

Here is the call graph for this function:

void broad.pda.geneexpression.PaGEJava.write	(	String	save,
		File	chipfile,
		double	alpha,
		double	fold
	)		throws IOException

Here is the call graph for this function:

The documentation for this class was generated from the following file: