broad.pda.gene.transcriptsNullModel Class Reference

Collaboration diagram for broad.pda.gene.transcriptsNullModel:

Classes
class	chrSizeNode

Public Member Functions
	transcriptsNullModel (BEDFileParser refGenes, BEDFileParser centromers, String chrSizeF) throws IOException
void	makeRandTranscriptList (int numRand, BEDFileParser ref)
void	printRandModels (String outprefix) throws IOException
void	writeIntergenicGenome (String outf) throws IOException
ArrayList< BEDFileParser >	getRandomSets ()
void	CrossRandModelsWithBed (String bedToCrossWith_fname, BEDFileParser refBed, String outfile) throws IOException

Constructor & Destructor Documentation

broad.pda.gene.transcriptsNullModel.transcriptsNullModel	(	BEDFileParser	refGenes,
		BEDFileParser	centromers,
		String	chrSizeF
	)		throws IOException

Member Function Documentation

void broad.pda.gene.transcriptsNullModel.CrossRandModelsWithBed	(	String	bedToCrossWith_fname,
		BEDFileParser	refBed,
		String	outfile
	)		throws IOException

Here is the call graph for this function:

ArrayList<BEDFileParser> broad.pda.gene.transcriptsNullModel.getRandomSets

(

)

Here is the caller graph for this function:

void broad.pda.gene.transcriptsNullModel.makeRandTranscriptList	(	int	numRand,
		BEDFileParser	ref
	)

Here is the call graph for this function:

void broad.pda.gene.transcriptsNullModel.printRandModels

(

String

outprefix

)

throws IOException

Here is the caller graph for this function:

void broad.pda.gene.transcriptsNullModel.writeIntergenicGenome

(

String

outf

)

throws IOException

---

The documentation for this class was generated from the following file:

• java/broad/pda/gene/transcriptsNullModel.java