broad.pda.gene.NeighborAnalysis Member List

This is the complete list of members for broad.pda.gene.NeighborAnalysis, including all inherited members.

getLeftNeighbor(Gene g, BEDFileParser ref)	broad.pda.gene.NeighborAnalysis	static
getNeighborDistance(Gene g)	broad.pda.gene.NeighborAnalysis
getNeighbors(BEDFileParser neighborsBed, BufferedWriter bw, boolean toWrite, double distThreshold)	broad.pda.gene.NeighborAnalysis
getNeighbors(Gene g)	broad.pda.gene.NeighborAnalysis
getRightNeighbor(Gene g, BEDFileParser ref)	broad.pda.gene.NeighborAnalysis	static
main(String[] args)	broad.pda.gene.NeighborAnalysis	static
NeighborAnalysis()	broad.pda.gene.NeighborAnalysis
NeighborAnalysis(String setname, String refname)	broad.pda.gene.NeighborAnalysis
NeighborAnalysis(BEDFileParser newGeneSet, BEDFileParser newRefSet)	broad.pda.gene.NeighborAnalysis
updateDistanceToNeighbors()	broad.pda.gene.NeighborAnalysis