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broad.pda.enrichment.EnrichmentUtils Class Reference

Static Public Member Functions

static SortedMap< String, File > findAnnotationFiles (File dir, String[] fileExt)
 
static SortedMap< String, File > findAnnotationFiles (File dir, String[] fileExt, String basename)
 
static SortedMap< String, File > findAnnotationFiles (File dir, String[] fileExt, String basename, SortedMap< String, File > map)
 

Member Function Documentation

static SortedMap<String, File> broad.pda.enrichment.EnrichmentUtils.findAnnotationFiles ( File  dir,
String[]  fileExt 
)
static

Recursively visits directories to find genomic annotation files.

Parameters
dirBase directory
fileExtList of valid genomic annotation file extensions
Returns
Map of genomic annotation names and the corresponding files.

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static SortedMap<String, File> broad.pda.enrichment.EnrichmentUtils.findAnnotationFiles ( File  dir,
String[]  fileExt,
String  basename 
)
static

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static SortedMap<String, File> broad.pda.enrichment.EnrichmentUtils.findAnnotationFiles ( File  dir,
String[]  fileExt,
String  basename,
SortedMap< String, File >  map 
)
static

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The documentation for this class was generated from the following file:
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