broad.pda.differentialExpression.RunDifferentialExpression Member List

This is the complete list of members for broad.pda.differentialExpression.RunDifferentialExpression, including all inherited members.

getFDR()	broad.pda.differentialExpression.RunDifferentialExpression
getGenesPassingFDR(double alpha)	broad.pda.differentialExpression.RunDifferentialExpression
getResults()	broad.pda.differentialExpression.RunDifferentialExpression
main(String[] args)	broad.pda.differentialExpression.RunDifferentialExpression	static
RunDifferentialExpression(File gctFile, File experimentInfoFile, File chipFile, String save, boolean preprocess, double alpha, int perm)	broad.pda.differentialExpression.RunDifferentialExpression
RunDifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, int numPerm, double alpha)	broad.pda.differentialExpression.RunDifferentialExpression
RunDifferentialExpression(MatrixWithHeaders data, Map< String, Collection< String >> groups, int numPerm, double alpha)	broad.pda.differentialExpression.RunDifferentialExpression
writeResults(String outFile)	broad.pda.differentialExpression.RunDifferentialExpression