broad.pda.differentialExpression.Permutations Member List

This is the complete list of members for broad.pda.differentialExpression.Permutations, including all inherited members.

permuteAndAssignFDR(MatrixWithHeaders testStats, MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, int numberPermutations, double[] fudgeFactors, boolean useFold, boolean paired, double alpha)	broad.pda.differentialExpression.Permutations	static
permuteData(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, int numberPermutations, double[] fudgeFactors, boolean useFold, boolean paired)	broad.pda.differentialExpression.Permutations	static
permuteData(MatrixWithHeaders data, Map< String, Collection< String >> groups, int numberPermutations, double[] fudgeFactors, boolean useFold, boolean paired)	broad.pda.differentialExpression.Permutations	static
permuteDataByGroupSize(MatrixWithHeaders data, int groupSize, Map< String, Collection< String >> groups, int numPerm, double[] fudgeFactors, boolean useFold)	broad.pda.differentialExpression.Permutations	static