broad.pda.differentialExpression.DifferentialExpression Member List

This is the complete list of members for broad.pda.differentialExpression.DifferentialExpression, including all inherited members.

DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, boolean useFold, boolean paired, int perm, double[] fudgeFactors, MatrixWithHeaders[] permutationMatrix, Map< String, FDRDistribution > fdrDists)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Map< String, Collection< String >> groups, boolean useFold, boolean paired, int perm, double[] fudgeFactors)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, boolean useFold, boolean paired, int perm, double[] fudgeFactors, MatrixWithHeaders[] permutationMatrix)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, boolean useFold, boolean paired, int perm)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, boolean useFold, boolean paired)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2)	broad.pda.differentialExpression.DifferentialExpression
DifferentialExpression(MatrixWithHeaders data, Collection< String > group1, Collection< String > group2, int perm)	broad.pda.differentialExpression.DifferentialExpression
getAbsFDRMatrix()	broad.pda.differentialExpression.DifferentialExpression
getFDRDistribution()	broad.pda.differentialExpression.DifferentialExpression
getFDRMatrix()	broad.pda.differentialExpression.DifferentialExpression
getFoldMatrix()	broad.pda.differentialExpression.DifferentialExpression
getFWERMatrix()	broad.pda.differentialExpression.DifferentialExpression
getGenesPassingFDR(double alpha)	broad.pda.differentialExpression.DifferentialExpression
getNominalPValueMatrix()	broad.pda.differentialExpression.DifferentialExpression
getPermutationMatrix()	broad.pda.differentialExpression.DifferentialExpression
getTestStatisticMatrix()	broad.pda.differentialExpression.DifferentialExpression