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broad.pda.datastructures.AlignmentsReader Member List

This is the complete list of members for broad.pda.datastructures.AlignmentsReader, including all inherited members.

AlignmentsReader()broad.pda.datastructures.AlignmentsReader
AlignmentsReader(Collection< Alignments > annot)broad.pda.datastructures.AlignmentsReader
AlignmentsReader(BufferedReader br)broad.pda.datastructures.AlignmentsReader
AlignmentsReader(String input)broad.pda.datastructures.AlignmentsReader
createAnnotation(GenomicAnnotation a)broad.pda.datastructures.AlignmentsReader
load(BufferedReader br)broad.pda.datastructures.AlignmentsReader
parse(BufferedReader br, GenomicAnnotationFilter< Alignments > filter, AnnotationHandler handler)broad.pda.datastructures.AlignmentsReader
parse(String file, GenomicAnnotationFilter< Alignments > filter, AnnotationHandler handler)broad.pda.datastructures.AlignmentsReader
write(BufferedWriter bw)broad.pda.datastructures.AlignmentsReader