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broad.core.util.ParseGCTFile Member List

This is the complete list of members for broad.core.util.ParseGCTFile, including all inherited members.

getControlClass(File file)broad.core.util.ParseGCTFilestatic
getGroupIndexes(ArrayList< String > groups)broad.core.util.ParseGCTFilestatic
getGroupIndexes(File clsFile)broad.core.util.ParseGCTFilestatic
getIndexGroup(ArrayList< String > groups)broad.core.util.ParseGCTFilestatic
getOrderedListCDT(File file)broad.core.util.ParseGCTFilestatic
loadData(File file)broad.core.util.ParseGCTFilestatic
loadPIDName(File file)broad.core.util.ParseGCTFilestatic
logTransform(Map< String, ArrayList< Double >> data, double addFactor)broad.core.util.ParseGCTFilestatic
parseCDT(File file)broad.core.util.ParseGCTFilestatic
parseChipFile(File file)broad.core.util.ParseGCTFilestatic
parseCLS(File file)broad.core.util.ParseGCTFilestatic
parseCLSGroups(File file)broad.core.util.ParseGCTFilestatic
parseGeneList(File file)broad.core.util.ParseGCTFilestatic
parseNumericCls(File file, List< String > header)broad.core.util.ParseGCTFilestatic
writeGCT(String save, Map< String, ArrayList > gct)broad.core.util.ParseGCTFilestatic
writeGMTFile(String save, Map< String, Collection< String >> gmtFile)broad.core.util.ParseGCTFilestatic
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