Static Public Member Functions
static Map< String, Collection < String > >	ParseGMTFile (File gmtFile, int minNum) throws IOException

static Map< String, Collection < String > >	parseGMXFile (File gmxFile, int minNum) throws IOException

static Map< String, String >	parseCHIPFile (File file) throws IOException

static void	writeGMT (String save, Map< String, Collection< String >> geneSets) throws IOException

static Map< String, Collection < String > >	ParseGeneSetFile (File gmtFile, int minNum) throws IOException

static Map< String, Collection < String > >	parseCHIPFileByName (File chipFile) throws IOException

Member Function Documentation

static Map<String, String> broad.core.util.GMTParser.parseCHIPFile ( File file ) throws IOException

static

static Map<String, Collection<String> > broad.core.util.GMTParser.parseCHIPFileByName ( File chipFile ) throws IOException

static

static Map<String, Collection<String> > broad.core.util.GMTParser.ParseGeneSetFile	(	File	gmtFile,
		int	minNum
	)		throws IOException

static

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static Map<String, Collection<String> > broad.core.util.GMTParser.ParseGMTFile	(	File	gmtFile,
		int	minNum
	)		throws IOException

static

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static Map<String, Collection<String> > broad.core.util.GMTParser.parseGMXFile	(	File	gmxFile,
		int	minNum
	)		throws IOException

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static void broad.core.util.GMTParser.writeGMT	(	String	save,
		Map< String, Collection< String >>	geneSets
	)		throws IOException

static

The documentation for this class was generated from the following file:

Static Public Member Functions