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broad.core.siphy.tools.conservation.EstimateOmegaPerExon Member List

This is the complete list of members for broad.core.siphy.tools.conservation.EstimateOmegaPerExon, including all inherited members.

EstimateOmegaPerExon(File BEDFile, File modelFile, String alnDir, String alnFileFormat, String save)broad.core.siphy.tools.conservation.EstimateOmegaPerExon
EstimateOmegaPerExon(Collection< Gene > genes, File modelFile, String alnDir, String alnFileFormat, String save)broad.core.siphy.tools.conservation.EstimateOmegaPerExon
fitOmega(Annotation align, File modelFile, String alnFile, String alnFileFormat)broad.core.siphy.tools.conservation.EstimateOmegaPerExonstatic
fitOmega(Alignments align, TreeScaler scaler)broad.core.siphy.tools.conservation.EstimateOmegaPerExonstatic
main(String[] args)broad.core.siphy.tools.conservation.EstimateOmegaPerExonstatic
slideWindowComputeOmega(Annotation align, File modelFile, String alnFile, String alnFileFormat, int windowSize, int overlap)broad.core.siphy.tools.conservation.EstimateOmegaPerExonstatic
slideWindowComputeOmega(Alignments align, TreeScaler scaler, int windowSize, int overlap)broad.core.siphy.tools.conservation.EstimateOmegaPerExonstatic
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