broad.core.sequence.TranscribedRegions Member List

This is the complete list of members for broad.core.sequence.TranscribedRegions, including all inherited members.

getGenes()	broad.core.sequence.TranscribedRegions
getOrientation(String chr, int pos)	broad.core.sequence.TranscribedRegions
getTranscribedBase(String chr, int pos, Strand strand)	broad.core.sequence.TranscribedRegions
getTranscribedBase(String chr, int pos)	broad.core.sequence.TranscribedRegions
main(String[] args)	broad.core.sequence.TranscribedRegions	static
shiftPosition(String chr, int pos, int offset)	broad.core.sequence.TranscribedRegions
TranscribedRegions(String genomeFasta, String bedFile)	broad.core.sequence.TranscribedRegions