ESAT
 All Classes Namespaces Files Functions Variables Enumerator Pages
broad.core.sequence.SequenceUtils Member List

This is the complete list of members for broad.core.sequence.SequenceUtils, including all inherited members.

getChrSequence(String seqDir, String chr)broad.core.sequence.SequenceUtilsstatic
getChrSizesFile(String seqDir)broad.core.sequence.SequenceUtilsstatic
getDataModel(String bamFile, String sizeFile, String chr, boolean removeDuplicates)broad.core.sequence.SequenceUtilsstatic
getDataModel(String bamFile, String sizeFile, boolean removeDuplicates)broad.core.sequence.SequenceUtilsstatic
getDataModel(String bamFile, String sizeFile, int minMappingQuality, boolean removeDuplicateFlags, boolean weighReadCounts, String strand, boolean loadPairsAsFragments)broad.core.sequence.SequenceUtilsstatic
Generated on Fri Aug 15 2014 15:10:56 for ESAT by   doxygen 1.8.7