Public Member Functions
	FastaQualityIndex ()

void	createIndexFromQualityFile (String fastaQualityFile, final long period) throws IOException

void	loadFromAscii (String indexFile) throws IOException

void	writeAsText (String outFile) throws IOException

Static Public Member Functions
static void	main (String[] args) throws Exception

Constructor & Destructor Documentation

broad.core.sequence.FastaQualityIndex.FastaQualityIndex ( )

Here is the caller graph for this function:

Member Function Documentation

void broad.core.sequence.FastaQualityIndex.createIndexFromQualityFile	(	String	fastaQualityFile,
		final long	period
	)		throws IOException

void broad.core.sequence.FastaQualityIndex.loadFromAscii ( String indexFile ) throws IOException

static void broad.core.sequence.FastaQualityIndex.main ( String[] args ) throws Exception

static

Here is the call graph for this function:

void broad.core.sequence.FastaQualityIndex.writeAsText ( String outFile ) throws IOException

The documentation for this class was generated from the following file: