Inheritance diagram for broad.core.sequence.FastaParser:

Collaboration diagram for broad.core.sequence.FastaParser:

Public Member Functions
void	parse (InputStream in, FastaHandler handler) throws IOException

Public Member Functions inherited from broad.core.sequence.AbstractFastaParser
String	getCurrentSequenceId ()

long	getOffset () throws IOException

long	getFileSize ()

char	getCurrentBase ()

Additional Inherited Members
Static Public Attributes inherited from broad.core.sequence.AbstractFastaParser
static final int	BUFFER_SIZE = 8192

Protected Member Functions inherited from broad.core.sequence.AbstractFastaParser
void	setCurrentSequenceId (String currentSequenceId)

Protected Attributes inherited from broad.core.sequence.AbstractFastaParser
long	fileSize

long	offset

char	currentBase

Member Function Documentation

void broad.core.sequence.FastaParser.parse	(	InputStream	in,
		FastaHandler	handler
	)		throws IOException

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The documentation for this class was generated from the following file:

Public Member Functions