broad.core.sequence.AbstractFastaParser Class Reference

Inheritance diagram for broad.core.sequence.AbstractFastaParser:

Public Member Functions
String	getCurrentSequenceId ()
long	getOffset () throws IOException
long	getFileSize ()
char	getCurrentBase ()

Static Public Attributes
static final int	BUFFER_SIZE = 8192

Protected Member Functions
void	setCurrentSequenceId (String currentSequenceId)

Protected Attributes
long	fileSize
long	offset
char	currentBase

Member Function Documentation

char broad.core.sequence.AbstractFastaParser.getCurrentBase

(

)

String broad.core.sequence.AbstractFastaParser.getCurrentSequenceId

(

)

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long broad.core.sequence.AbstractFastaParser.getFileSize

(

)

long broad.core.sequence.AbstractFastaParser.getOffset

(

)

throws IOException

void broad.core.sequence.AbstractFastaParser.setCurrentSequenceId ( String  currentSequenceId )

protected

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Member Data Documentation

final int broad.core.sequence.AbstractFastaParser.BUFFER_SIZE = 8192

static

char broad.core.sequence.AbstractFastaParser.currentBase

protected

long broad.core.sequence.AbstractFastaParser.fileSize

protected

long broad.core.sequence.AbstractFastaParser.offset

protected

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The documentation for this class was generated from the following file:

• java/broad/core/sequence/AbstractFastaParser.java