This is the complete list of members for broad.core.primer3.HairpinKmer, including all inherited members.

addTranscript(RNAiGeneAnnotation transcript)	broad.core.primer3.HairpinKmer
compareTo(HairpinKmer kmer)	broad.core.primer3.HairpinKmer
getBlastHit()	broad.core.primer3.HairpinKmer
getKmerEndPosition()	broad.core.primer3.HairpinKmer
getKmerSequence()	broad.core.primer3.HairpinKmer
getKmerStartPosition()	broad.core.primer3.HairpinKmer
getMirScore()	broad.core.primer3.HairpinKmer
getOriginalScore()	broad.core.primer3.HairpinKmer
getOverlap(HairpinKmer hp)	broad.core.primer3.HairpinKmer
getPercentGC()	broad.core.primer3.HairpinKmer
getPercentVariantsCovered()	broad.core.primer3.HairpinKmer
getRelativePositions(RNAiGeneAnnotation transcript)	broad.core.primer3.HairpinKmer
getRS8Score()	broad.core.primer3.HairpinKmer
getTranscripts()	broad.core.primer3.HairpinKmer
HairpinKmer(String kmer, int relativeStart, int relativeEnd)	broad.core.primer3.HairpinKmer
HairpinKmer(String kmer, int relativeStart, int relativeEnd, Map< String, Double > mirLookup, Set< String > lookup2, Set< String > rcLookup2)	broad.core.primer3.HairpinKmer
maxSelfComplementarity()	broad.core.primer3.HairpinKmer
setBlastHit(boolean b)	broad.core.primer3.HairpinKmer
setMirScore(double score)	broad.core.primer3.HairpinKmer
setOriginalScore(double score)	broad.core.primer3.HairpinKmer
setPercentVariantsCovered(double percent)	broad.core.primer3.HairpinKmer
setRS8Score(double score)	broad.core.primer3.HairpinKmer