Static Public Member Functions
static Collection< HairpinKmer >	computeOriginalScore (String seq, int k)

static List< HairpinKmer >	enumerateAllKMers (String sequence, int k)

static double[]	computeOriginalScorePerKMer (String kmer)

static double	computeGCPercent (String kmer)

static List< HairpinKmer >	enumerateAllKMers (String sequence, int k, Map< String, Double > mirLookup, Set< String > lookup2, Set< String > rcLookup2)

Member Function Documentation

static double broad.core.primer3.ComputeOriginalScore.computeGCPercent ( String kmer )

static

static Collection<HairpinKmer> broad.core.primer3.ComputeOriginalScore.computeOriginalScore	(	String	seq,
		int	k
	)

static

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static double [] broad.core.primer3.ComputeOriginalScore.computeOriginalScorePerKMer ( String kmer )

static

static List<HairpinKmer> broad.core.primer3.ComputeOriginalScore.enumerateAllKMers	(	String	sequence,
		int	k
	)

static

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static List<HairpinKmer> broad.core.primer3.ComputeOriginalScore.enumerateAllKMers	(	String	sequence,
		int	k,
		Map< String, Double >	mirLookup,
		Set< String >	lookup2,
		Set< String >	rcLookup2
	)

static

The documentation for this class was generated from the following file:

Static Public Member Functions