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broad.core.primer3.ComputeOriginalScore Class Reference

Static Public Member Functions

static Collection< HairpinKmercomputeOriginalScore (String seq, int k)
 
static List< HairpinKmerenumerateAllKMers (String sequence, int k)
 
static double[] computeOriginalScorePerKMer (String kmer)
 
static double computeGCPercent (String kmer)
 
static List< HairpinKmerenumerateAllKMers (String sequence, int k, Map< String, Double > mirLookup, Set< String > lookup2, Set< String > rcLookup2)
 

Member Function Documentation

static double broad.core.primer3.ComputeOriginalScore.computeGCPercent ( String  kmer)
static
static Collection<HairpinKmer> broad.core.primer3.ComputeOriginalScore.computeOriginalScore ( String  seq,
int  k 
)
static

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static double [] broad.core.primer3.ComputeOriginalScore.computeOriginalScorePerKMer ( String  kmer)
static
static List<HairpinKmer> broad.core.primer3.ComputeOriginalScore.enumerateAllKMers ( String  sequence,
int  k 
)
static

Here is the caller graph for this function:

static List<HairpinKmer> broad.core.primer3.ComputeOriginalScore.enumerateAllKMers ( String  sequence,
int  k,
Map< String, Double >  mirLookup,
Set< String >  lookup2,
Set< String >  rcLookup2 
)
static

The documentation for this class was generated from the following file: