broad.core.multiplealignment.AlignmentExtractor Member List

This is the complete list of members for broad.core.multiplealignment.AlignmentExtractor, including all inherited members.

codonToAminoacid	broad.core.multiplealignment.AlignmentExtractor	static
degenerateCodonStarts	broad.core.multiplealignment.AlignmentExtractor	static
extractGFFRegions(String alignmentFile, String outputFile, String gff, String inFormat, String outFormat, String[] seqs)	broad.core.multiplealignment.AlignmentExtractor	static
main(String[] args)	broad.core.multiplealignment.AlignmentExtractor	static
nonDegenerateCodons	broad.core.multiplealignment.AlignmentExtractor	static
threeFoldDegenerateCodons	broad.core.multiplealignment.AlignmentExtractor	static
twoFoldDegenerateCodons	broad.core.multiplealignment.AlignmentExtractor	static
USAGE	broad.core.multiplealignment.AlignmentExtractor	static