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broad.core.motif.misc.ComputeConservedMotifs Member List

This is the complete list of members for broad.core.motif.misc.ComputeConservedMotifs, including all inherited members.

ComputeConservedMotifs(Alignments region, String pwmFile, String saveDir, String alignDir, String alignFormat, File modelFile)broad.core.motif.misc.ComputeConservedMotifs
getMotifNames(String pwmFile)broad.core.motif.misc.ComputeConservedMotifsstatic
main(String[] args)broad.core.motif.misc.ComputeConservedMotifsstatic
scoreMotifs(Alignments region, TreeScaler scaler, String alnFormat, String alignFile, String pwmFile, boolean reverseCompliment)broad.core.motif.misc.ComputeConservedMotifsstatic
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