Collaboration diagram for broad.core.motif.meme.MemeMotif:

Public Member Functions
	MemeMotif (String string)

String	getName ()

List< MatchedSequence >	getMatches ()

int	getWidth ()

int	getSites ()

float	getLlr ()

double	getEval ()

void	addMatch (Sequence match, int startInScannedSequence, double pval)

void	addPWMColumn (double[] col)

PositionWeightMatrix	getPWM ()

Constructor & Destructor Documentation

broad.core.motif.meme.MemeMotif.MemeMotif ( String string )

Member Function Documentation

void broad.core.motif.meme.MemeMotif.addMatch	(	Sequence	match,
		int	startInScannedSequence,
		double	pval
	)

void broad.core.motif.meme.MemeMotif.addPWMColumn ( double[] col )

double broad.core.motif.meme.MemeMotif.getEval ( )

float broad.core.motif.meme.MemeMotif.getLlr ( )

List<MatchedSequence> broad.core.motif.meme.MemeMotif.getMatches ( )

String broad.core.motif.meme.MemeMotif.getName ( )

PositionWeightMatrix broad.core.motif.meme.MemeMotif.getPWM ( )

int broad.core.motif.meme.MemeMotif.getSites ( )

int broad.core.motif.meme.MemeMotif.getWidth ( )

The documentation for this class was generated from the following file: