broad.core.motif.SequenceMotifCluster Member List

This is the complete list of members for broad.core.motif.SequenceMotifCluster, including all inherited members.

equals(Object o)	broad.core.motif.SequenceMotif
getConsensusSequence()	broad.core.motif.SequenceMotif
getCoreMotifs()	broad.core.motif.SequenceMotif	protected
getId()	broad.core.motif.SequenceMotif
getMotif()	broad.core.motif.SequenceMotif
getNumPossibleKmers()	broad.core.motif.SequenceMotif
hashCode()	broad.core.motif.SequenceMotif
main(String[] args)	broad.core.motif.SequenceMotifCluster	static
match(Sequence seq)	broad.core.motif.SequenceMotifCluster
match(Sequence seq, boolean includeRegionSequence)	broad.core.motif.SequenceMotifCluster
broad::core::motif::SequenceMotif.match(Sequence geneSeq, List< SequenceRegion > list, int length)	broad.core.motif.SequenceMotif
numPossibleKmers(String consensusSequence)	broad.core.motif.SequenceMotif	static
SequenceMotif(Pattern motif)	broad.core.motif.SequenceMotif
SequenceMotif(String corePattern, String identifier)	broad.core.motif.SequenceMotif
SequenceMotif(String corePattern)	broad.core.motif.SequenceMotif
SequenceMotif(String corePattern, int minsuccessive)	broad.core.motif.SequenceMotif
SequenceMotif(String corePattern, int minsuccessive, String identifier)	broad.core.motif.SequenceMotif
SequenceMotifCluster(String corePattern, int minsuccessiveCores, int maxPatternDistance)	broad.core.motif.SequenceMotifCluster
setMotif(Pattern motif)	broad.core.motif.SequenceMotif	protected
toString()	broad.core.motif.SequenceMotif
USAGE	broad.core.motif.SequenceMotifCluster	static