broad.core.motif.PWMUtils Member List

This is the complete list of members for broad.core.motif.PWMUtils, including all inherited members.

computeSequenceBGSequences(Map< String, Sequence > chrsByName, AnnotationReader<?extends GenomicAnnotation > reader)	broad.core.motif.PWMUtils	static
main(String[] args)	broad.core.motif.PWMUtils	static
scanRegion(int shuffles, String prefix, double minScoreToWrite, boolean maxOnly, String outdir, List< PositionWeightMatrix > pwms, String chr, Annotation annot, double[] bgNucleotideFreqs, short[] encChrSeq)	broad.core.motif.PWMUtils	static
USAGE	broad.core.motif.PWMUtils	static