broad.core.math.ScanStatistics Class Reference

Static Public Member Functions
static double	calculatePVal (int k, double lambda, double w, double T)
static double	calculateApproximatePVal (int k, double lambda, double w, double T, double alpha)
static double	poisson (int k, double lambda)
static double	Fp (int k, double lambdaW)
static double	FpWithBreaking (int k, double lambdaW, double a, double stopPoint)

Member Function Documentation

static double broad.core.math.ScanStatistics.calculateApproximatePVal ( int  k, double  lambda, double  w, double  T, double  alpha  )

static

Here is the call graph for this function:

static double broad.core.math.ScanStatistics.calculatePVal ( int  k, double  lambda, double  w, double  T  )

static

Params written by Jesse Aug 20, 2012 ... are these definitions correct?

Parameters

k	Observed count
lambda	# reads on chromosome / # non-masked bases on chromosome
w	window size
T	# non-masked bases on chromosome

Returns

Here is the call graph for this function:

Here is the caller graph for this function:

static double broad.core.math.ScanStatistics.Fp ( int  k, double  lambdaW  )

static

Here is the call graph for this function:

Here is the caller graph for this function:

static double broad.core.math.ScanStatistics.FpWithBreaking ( int  k, double  lambdaW, double  a, double  stopPoint  )

static

Here is the call graph for this function:

Here is the caller graph for this function:

static double broad.core.math.ScanStatistics.poisson ( int  k, double  lambda  )

static

Here is the caller graph for this function:

---

The documentation for this class was generated from the following file:

• java/broad/core/math/ScanStatistics.java