Public Member Functions
	FisherCombinedProbabilityTest (double[] pvals)

	FisherCombinedProbabilityTest (Collection< Double > pvals)

double	getTestStatistic ()

double	getNullDistDegreesOfFreedom ()

double	getCombinedPvalue ()

Detailed Description

Author: prussell Fisher's method to combine results of several independent tests bearing upon the same overall hypothesis

Constructor & Destructor Documentation

broad.core.math.FisherCombinedProbabilityTest.FisherCombinedProbabilityTest ( double[] pvals )

Instantiate with array of P values

Parameters

pvals The P values from the independent tests

broad.core.math.FisherCombinedProbabilityTest.FisherCombinedProbabilityTest ( Collection< Double > pvals )

Instantiate with collection of P values

Parameters

pvals The P values from the independent tests

double broad.core.math.FisherCombinedProbabilityTest.getCombinedPvalue ( )

Get the P value of the test statistic

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double broad.core.math.FisherCombinedProbabilityTest.getNullDistDegreesOfFreedom ( )

Get the number of degrees of freedom of the null chi square distribution

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double broad.core.math.FisherCombinedProbabilityTest.getTestStatistic ( )

Get the Fisher test statistic X^2

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The documentation for this class was generated from the following file: