broad.core.hmm.MarkovModel< T > Member List

This is the complete list of members for broad.core.hmm.MarkovModel< T >, including all inherited members.

addState(MarkovState< T > state)	broad.core.hmm.MarkovModel< T >
addState(MarkovState< T > state, int stateIdx)	broad.core.hmm.MarkovModel< T >
computePathLogLikelihood(List< T > observationSequence, short[] path, int initialStateIdx, int endStateIdx)	broad.core.hmm.MarkovModel< T >
drawInitialState()	broad.core.hmm.MarkovModel< T >	protected
drawNextState(int prior)	broad.core.hmm.MarkovModel< T >	protected
emitPath(int numOfSteps)	broad.core.hmm.MarkovModel< T >
getConsistencyProblems()	broad.core.hmm.MarkovModel< T >	protected
getInitialStateTransitionProbabilities()	broad.core.hmm.MarkovModel< T >	protected
getState(String stateName)	broad.core.hmm.MarkovModel< T >
getStates()	broad.core.hmm.MarkovModel< T >	protected
getStateTransitionMatrix()	broad.core.hmm.MarkovModel< T >	protected
MarkovModel(int numberOfStates)	broad.core.hmm.MarkovModel< T >
runBackwardAlgorithm(List< T > observationSequence, ForwardResult< T > forwardData)	broad.core.hmm.MarkovModel< T >
runForwardAlgorithm(List< T > observationSequence)	broad.core.hmm.MarkovModel< T >
runForwardAlgorithmNoRescaling(List< T > observationSequence)	broad.core.hmm.MarkovModel< T >
setEndStateTransitionProbability(int stateIdx, double probability)	broad.core.hmm.MarkovModel< T >
setInitialStateTransitionProbability(int stateIdx, double probability)	broad.core.hmm.MarkovModel< T >
setStateTransitionProbability(int stateIdx1, int stateIdx2, double probability)	broad.core.hmm.MarkovModel< T >
viterbiMostLikelyEstimation(List< T > observationSequence)	broad.core.hmm.MarkovModel< T >